Figure 5. Phylogenetic neighbor-joining tree based on a comparison of 152 bp of 16S rRNA gene sequences from AOB of the β-subclass of the Proteobacteria and some other β -proteobacteria. The tree is rooted with two sequences of AOB belonging to the β-subclass of Proteobacteria. Our DGGE sequences are boldfaced. Their designations are composed of N, for nested PCR products; J2, S2, or S3, for a sampling date of July 2012, September 2012, or September 2013; A to L, w1, or w2, for the band as labeled in Figure 3; and, at the end, either the name of the sampling station from which the sequence originated or WWin or WWout (explained in the legend to Figure 3).

From

Exploited Application of Denaturing Gradient Gel Electrophoresis in Analysis of Ammonia Oxidizing Bacterial Community Structure

Maulin P Shah

Journal of Applied & Environmental Microbiology. 2014, 2(4), 116-127 doi:10.12691/jaem-2-4-5