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Assessing the Allelic Diversity of OsNRAMP5 among Sri Lankan Traditional Rice Varieties by in silico Analysis

Tharanya Sugumar, Tharukeshini Gunawardhana, Kushani Akshala Dilhani Rajapaksha, Nadeeka Upamali Jayawardana

American Journal of Food Science and Technology. 2022, 10(4), 183-190 doi:10.12691/ajfst-10-4-5
  • Table 1. Haplotypes of OsNRAMP5 identified among 47 Sri Lankan traditional rice varieties. Haplotype 1 is represented by Oryza sativa subsp. japonica variety Nipponbare and haplotype 2 by indica subsp. cultivar 93-11. The position of every SNP is indicated in the first row (SNP frequency>5%). Blue shade represents the SNP variations in the reference variety Nipponbare and any deviations from that are denoted by white shade
  • Table 2. Relative frequencies of genic haplotypes of OsNRAMP5 among Sri Lankan traditional rice varieties. Haplotypes having more than 5 % relative frequencies are shown here
  • Table 3. Promoter haplotypes of OsNRAMP5 identified among 47 Sri Lankan traditional rice varieties. HAP 1 is represented by japonica subsp. Nipponbare and HAP3 by indica subsp. cultivar 93-11. Blue shade represents the SNP variations in reference variety Nipponbare and any deviations from that are denoted by white shade
  • Table 4. Relative frequencies of haplotypes of promoter region of OsNRAMP5 among Sri Lankan varieties with more than 5% relative frequencies